Well, my dealer called yesterday and had the replacement fobs in stock. It took about 45 minutes for them to to swap them out and now all is good. As the replacement was done as a warranty claim, there was no charge.
So I pm'd Jeep Cares and provided my VIN, mileage and local dealer and the reply was to contact the dealer on my own. @JeepCares are you no longer assisting owners with getting the fobs replaced?
Awesome, thanks! I've had my truck washed twice and both times I removed the cover. It's obviously not hard to do, but suck when it's 100 degrees outside like today in Dallas.